STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ66454.1Conserved repeat domain-containing protein/gliding motility-associated C-terminal domain-containing protein. (1148 aa)    
Predicted Functional Partners:
SHJ66466.1
Type IX secretion system membrane protein, PorP/SprF family.
 
     0.838
SHJ66491.1
WD40-like Beta Propeller Repeat.
 
  0.829
SHI45424.1
Subtilase family protein.
  
 
   0.565
SHJ19728.1
Glyoxylase, beta-lactamase superfamily II.
  
     0.533
SHJ39555.1
Lysophospholipase L1.
  
 
   0.472
SHJ23416.1
Glycerophosphoryl diester phosphodiesterase.
   
  0.450
SHJ62412.1
PAP2 superfamily protein.
  
 
   0.428
SHJ39267.1
Subtilase family protein.
  
 
   0.424
SHI31778.1
Glycosyl hydrolase-like 10.
  
     0.415
SHI32015.1
Starch-binding associating with outer membrane.
  
 
   0.406
Your Current Organism:
Aquimarina spongiae
NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6
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