STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS40559.1Lia operon protein LiaF. (234 aa)    
Predicted Functional Partners:
SIS40564.1
Two-component system, NarL family, sensor histidine kinase LiaS.
 
  
 0.973
SIS40554.1
Phage shock protein A (PspA) family protein.
 
  
 0.947
SIS40549.1
Lia operon protein LiaI.
 
    0.909
SIS40570.1
Two component transcriptional regulator, LuxR family.
 
    0.898
SIS43204.1
DUF4097 and DUF4098 domain-containing protein YvlB.
 
  
 0.860
SIS42936.1
Two-component system, NarL family, sensor histidine kinase DegS; Member of the two-component regulatory system DegS/DegU, which plays an important role in the transition growth phase.
  
  
 0.649
SIS51053.1
Two-component system, NarL family, sensor histidine kinase ComP.
  
  
 0.649
SIS41310.1
DNA-directed RNA polymerase subunit beta.
  
     0.637
SIS40575.1
Ribose-5-phosphate isomerase.
       0.607
SIS47326.1
Uncharacterized membrane protein YheB, UPF0754 family.
   
    0.601
Your Current Organism:
Salimicrobium flavidum
NCBI taxonomy Id: 570947
Other names: CCUG 56755, DSM 23127, KCTC 13260, S. flavidum, Salimicrobium flavidum Yoon et al. 2009, Salimicrobium sp. ISL-25, strain ISL-25
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