STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS40805.1TRAP transporter, DctM subunit. (421 aa)    
Predicted Functional Partners:
SIS40810.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
 0.995
SIS40798.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.977
SIS64024.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.929
SIS64015.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
 0.829
SIS64034.1
C4-dicarboxylate transporter, DctM subunit.
 
0.813
SIS36936.1
Biotin carboxylase /acetyl-CoA carboxylase carboxyltransferase subunit alpha; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
     
 0.435
SIS37760.1
[Acyl-carrier-protein] S-malonyltransferase.
  
 
  0.426
accD
acetyl-CoA carboxylase carboxyltransferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
    
  0.418
SIS41053.1
Fe-S oxidoreductase.
     
 0.405
Your Current Organism:
Salimicrobium flavidum
NCBI taxonomy Id: 570947
Other names: CCUG 56755, DSM 23127, KCTC 13260, S. flavidum, Salimicrobium flavidum Yoon et al. 2009, Salimicrobium sp. ISL-25, strain ISL-25
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