STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS44903.1DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (300 aa)    
Predicted Functional Partners:
SIS47267.1
Glutamate synthase (NADH) large subunit.
  
  
 0.523
SIS47974.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
     
 0.487
SIS44905.1
Acyl-CoA hydrolase.
  
    0.464
SIS44913.1
Hypothetical protein.
       0.456
hmp
Nitric oxide dioxygenase; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily.
 
   
 0.453
SIS40739.1
iron(III) transport system permease protein.
  
 
  0.435
SIS40745.1
iron(III) transport system substrate-binding protein.
    
  0.419
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.418
SIS37300.1
Cold-inducible protein YdjO.
  
     0.408
Your Current Organism:
Salimicrobium flavidum
NCBI taxonomy Id: 570947
Other names: CCUG 56755, DSM 23127, KCTC 13260, S. flavidum, Salimicrobium flavidum Yoon et al. 2009, Salimicrobium sp. ISL-25, strain ISL-25
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