STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS62693.1Helix-turn-helix. (428 aa)    
Predicted Functional Partners:
cinA
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
 0.810
SIS62701.1
Hypothetical protein.
       0.773
SIS37203.1
Uncharacterized protein YpmB.
  
     0.753
SIS37699.1
Hypothetical protein.
  
     0.740
SIS43039.1
Flagellar protein FliT.
  
     0.719
SIS42845.1
IDEAL domain-containing protein.
  
     0.681
SIS55217.1
Two-component signal transduction system YycFG, regulatory protein YycH.
  
     0.671
SIS48935.1
Cysteine-rich secretory protein family protein.
  
     0.648
SIS49481.1
Hypothetical protein.
  
     0.636
SIS37639.1
Hook-length control protein FliK.
  
     0.624
Your Current Organism:
Salimicrobium flavidum
NCBI taxonomy Id: 570947
Other names: CCUG 56755, DSM 23127, KCTC 13260, S. flavidum, Salimicrobium flavidum Yoon et al. 2009, Salimicrobium sp. ISL-25, strain ISL-25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.