STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000420625_00118Unannotated protein. (606 aa)    
Predicted Functional Partners:
GCA_000420625_01160
Unannotated protein.
  
 0.976
GCA_000420625_03084
Unannotated protein.
   
0.964
GCA_000420625_02020
Unannotated protein.
 
 0.899
GCA_000420625_01828
Unannotated protein.
  
 0.854
GCA_000420625_02795
Unannotated protein.
     
 0.852
GCA_000420625_01496
Unannotated protein.
   
 0.849
GCA_000420625_01340
Unannotated protein.
  
 0.842
GCA_000420625_00922
Unannotated protein.
 
   
 0.837
GCA_000420625_03381
Unannotated protein.
   
 
  0.834
GCA_000420625_00894
Unannotated protein.
  
  0.825
Your Current Organism:
Fodinicurvata sediminis
NCBI taxonomy Id: 570952
Other names: F. sediminis DSM 21159, Fodinicurvata sediminis DSM 21159, Rhodospirillaceae bacterium YIM D82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.