STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000420625_00815Unannotated protein. (229 aa)    
Predicted Functional Partners:
GCA_000420625_00076
Unannotated protein.
 
    0.892
GCA_000420625_01944
Unannotated protein.
  
  
 0.870
GCA_000420625_00814
Unannotated protein.
       0.806
GCA_000420625_01325
Unannotated protein.
  
  
 0.775
GCA_000420625_03453
Unannotated protein.
  
  
 0.769
GCA_000420625_00085
Unannotated protein.
 
   
 0.758
GCA_000420625_01495
Unannotated protein.
 
   
 0.749
GCA_000420625_02956
Unannotated protein.
  
  
 0.719
GCA_000420625_00297
Unannotated protein.
 
  
 0.704
GCA_000420625_00615
Unannotated protein.
  
    0.679
Your Current Organism:
Fodinicurvata sediminis
NCBI taxonomy Id: 570952
Other names: F. sediminis DSM 21159, Fodinicurvata sediminis DSM 21159, Rhodospirillaceae bacterium YIM D82
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.