STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000420625_00881Unannotated protein. (259 aa)    
Predicted Functional Partners:
GCA_000420625_02020
Unannotated protein.
  
 0.951
GCA_000420625_02019
Unannotated protein.
  
 
 0.945
GCA_000420625_01160
Unannotated protein.
  
 
 0.867
GCA_000420625_03450
Unannotated protein.
    
  0.855
GCA_000420625_02537
Unannotated protein.
  
 
  0.792
GCA_000420625_00943
Unannotated protein.
  
 
  0.778
GCA_000420625_01625
Unannotated protein.
  
 
  0.752
GCA_000420625_00423
Unannotated protein.
    
 0.751
GCA_000420625_00900
Unannotated protein.
 
  0.746
GCA_000420625_01773
Unannotated protein.
  
 
  0.708
Your Current Organism:
Fodinicurvata sediminis
NCBI taxonomy Id: 570952
Other names: F. sediminis DSM 21159, Fodinicurvata sediminis DSM 21159, Rhodospirillaceae bacterium YIM D82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.