STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000420625_01030Unannotated protein. (171 aa)    
Predicted Functional Partners:
GCA_000420625_01031
Unannotated protein.
 
     0.748
GCA_000420625_01029
Unannotated protein.
       0.689
GCA_000420625_00875
Unannotated protein.
  
     0.621
GCA_000420625_01468
Unannotated protein.
  
     0.600
GCA_000420625_01776
Unannotated protein.
  
     0.580
GCA_000420625_01234
Unannotated protein.
  
     0.568
GCA_000420625_01032
Unannotated protein.
       0.550
GCA_000420625_01244
Unannotated protein.
  
     0.550
GCA_000420625_01467
Unannotated protein.
  
     0.542
GCA_000420625_00856
Unannotated protein.
  
     0.541
Your Current Organism:
Fodinicurvata sediminis
NCBI taxonomy Id: 570952
Other names: F. sediminis DSM 21159, Fodinicurvata sediminis DSM 21159, Rhodospirillaceae bacterium YIM D82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.