STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000420625_01443Unannotated protein. (551 aa)    
Predicted Functional Partners:
GCA_000420625_01445
Unannotated protein.
 
     0.580
GCA_000420625_01444
Unannotated protein.
       0.503
GCA_000420625_01447
Unannotated protein.
 
     0.482
GCA_000420625_01450
Unannotated protein.
 
     0.474
GCA_000420625_01451
Unannotated protein.
 
     0.474
GCA_000420625_01449
Unannotated protein.
 
     0.465
GCA_000420625_01442
Unannotated protein.
       0.438
GCA_000420625_01454
Unannotated protein.
 
     0.424
GCA_000420625_00095
Unannotated protein.
  
     0.400
Your Current Organism:
Fodinicurvata sediminis
NCBI taxonomy Id: 570952
Other names: F. sediminis DSM 21159, Fodinicurvata sediminis DSM 21159, Rhodospirillaceae bacterium YIM D82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.