Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKL33807.1Citrate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)    
Predicted Functional Partners:
AKL34250.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.653
AKL38358.1
1,4-alpha-glucan branching protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.650
cdh
CDP-diacylglycerol pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.618
AKL37181.1
ninB protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.578
yibH_1-2
Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.546
AKL37841.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.519
nasR
Nitrate regulatory protein; Nitrate- and nitrite-responsive positive regulator for nasFEDCBA operon expression. NasR protein binds to the factor- independent terminator site located in the nasF operon leader RNA to effect transcription antitermination.
  
     0.513
AKL36621.1
LamB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.467
AKL38737.1
LamB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.466
AKL35973.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.447
Your Current Organism:
Klebsiella oxytoca
NCBI taxonomy Id: 571
Other names: ATCC 13182, Bacillus oxytocus perniciosus, CCUG 15717, CIP 103434, DSM 5175, IAM 14201, K. oxytoca, Klebsiella sp. CECRI-24/07, Klebsiella sp. MN9SED2, LMG 3055, LMG:3055, NBRC 102593, NBRC 105695, NCTC 13727, strain 479-2
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