Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
yiaWMembrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)    
Predicted Functional Partners:
yibH_1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.952
AKL38092.1
Pullulanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
AKL33864.1
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.591
AKL38851.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.519
AKL38677.1
Sel1 repeat; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.483
epsM_2
General secretion pathway protein GspM; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.471
ydhR
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.450
yiaB
Inner membrane protein YiaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.443
AKL34310.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.433
selB
selenocysteinyl-tRNA-specific translation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.430
Your Current Organism:
Klebsiella oxytoca
NCBI taxonomy Id: 571
Other names: ATCC 13182, Bacillus oxytocus perniciosus, CCUG 15717, CIP 103434, DSM 5175, IAM 14201, K. oxytoca, Klebsiella sp. CECRI-24/07, Klebsiella sp. MN9SED2, LMG 3055, LMG:3055, NBRC 102593, NBRC 105695, NCTC 13727, strain 479-2
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