Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKL33942.1Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)    
Predicted Functional Partners:
AKL37176.1
Muraminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
AKL38887.1
Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.745
AKL33943.1
GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.673
AKL36844.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.502
treF
Trehalase; Hydrolyzes trehalose to glucose. Could be involved, in cells returning to low osmolarity conditions, in the utilization of the accumulated cytoplasmic trehalose, which was synthesized in response to high osmolarity.
       0.464
AKL36834.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.453
AKL36847.1
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.438
AKL36836.1
Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.432
AKL36849.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.427
AKL36831.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.409
Your Current Organism:
Klebsiella oxytoca
NCBI taxonomy Id: 571
Other names: ATCC 13182, Bacillus oxytocus perniciosus, CCUG 15717, CIP 103434, DSM 5175, IAM 14201, K. oxytoca, Klebsiella sp. CECRI-24/07, Klebsiella sp. MN9SED2, LMG 3055, LMG:3055, NBRC 102593, NBRC 105695, NCTC 13727, strain 479-2
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