Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rpe_1Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family. (225 aa)    
Predicted Functional Partners:
AKL35245.1
Carbohydrate degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.968
tkt
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
 
 0.965
tkt-2
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
 
 0.965
AKL37233.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.960
tktB_2
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.958
tktB_2-2
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.954
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
  
 0.950
dxs_2
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.942
AKL37336.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.942
cfxP
Phosphoribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.938
Your Current Organism:
Klebsiella oxytoca
NCBI taxonomy Id: 571
Other names: ATCC 13182, Bacillus oxytocus perniciosus, CCUG 15717, CIP 103434, DSM 5175, IAM 14201, K. oxytoca, Klebsiella sp. CECRI-24/07, Klebsiella sp. MN9SED2, LMG 3055, LMG:3055, NBRC 102593, NBRC 105695, NCTC 13727, strain 479-2
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