| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AKL38914.1 | yhbY | AB185_26190 | AB185_10080 | Antiterminator; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA-binding protein YhbY; RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.542 |
| bglG | nasR | AB185_16320 | AB185_18715 | Transcription antiterminator LicT; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nitrate regulatory protein; Nitrate- and nitrite-responsive positive regulator for nasFEDCBA operon expression. NasR protein binds to the factor- independent terminator site located in the nasF operon leader RNA to effect transcription antitermination. | 0.546 |
| bglG | ygcP | AB185_16320 | AB185_20935 | Transcription antiterminator LicT; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcriptional antiterminator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.642 |
| bglG | yhbY | AB185_16320 | AB185_10080 | Transcription antiterminator LicT; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA-binding protein YhbY; RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.603 |
| csrA | yhbY | AB185_13415 | AB185_10080 | Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | RNA-binding protein YhbY; RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.561 |
| infA | yhbY | AB185_26590 | AB185_10080 | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | RNA-binding protein YhbY; RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.506 |
| nadD | ybeB | AB185_27930 | AB185_27940 | Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | Ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.866 |
| nadD | yhbY | AB185_27930 | AB185_10080 | Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | RNA-binding protein YhbY; RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.777 |
| nasR | bglG | AB185_18715 | AB185_16320 | Nitrate regulatory protein; Nitrate- and nitrite-responsive positive regulator for nasFEDCBA operon expression. NasR protein binds to the factor- independent terminator site located in the nasF operon leader RNA to effect transcription antitermination. | Transcription antiterminator LicT; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.546 |
| nasR | ygcP | AB185_18715 | AB185_20935 | Nitrate regulatory protein; Nitrate- and nitrite-responsive positive regulator for nasFEDCBA operon expression. NasR protein binds to the factor- independent terminator site located in the nasF operon leader RNA to effect transcription antitermination. | Transcriptional antiterminator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.600 |
| nasR | yhbY | AB185_18715 | AB185_10080 | Nitrate regulatory protein; Nitrate- and nitrite-responsive positive regulator for nasFEDCBA operon expression. NasR protein binds to the factor- independent terminator site located in the nasF operon leader RNA to effect transcription antitermination. | RNA-binding protein YhbY; RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.587 |
| rrmJ | ybeB | AB185_10085 | AB185_27940 | 23S rRNA methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | Ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.469 |
| rrmJ | yhbY | AB185_10085 | AB185_10080 | 23S rRNA methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | RNA-binding protein YhbY; RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.610 |
| topA | yhbY | AB185_23795 | AB185_10080 | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | RNA-binding protein YhbY; RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.469 |
| ybeB | nadD | AB185_27940 | AB185_27930 | Ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | 0.866 |
| ybeB | rrmJ | AB185_27940 | AB185_10085 | Ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 23S rRNA methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | 0.469 |
| ybeB | yhbY | AB185_27940 | AB185_10080 | Ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | RNA-binding protein YhbY; RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.637 |
| ygcP | bglG | AB185_20935 | AB185_16320 | Transcriptional antiterminator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription antiterminator LicT; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.642 |
| ygcP | nasR | AB185_20935 | AB185_18715 | Transcriptional antiterminator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nitrate regulatory protein; Nitrate- and nitrite-responsive positive regulator for nasFEDCBA operon expression. NasR protein binds to the factor- independent terminator site located in the nasF operon leader RNA to effect transcription antitermination. | 0.600 |
| ygcP | yhbY | AB185_20935 | AB185_10080 | Transcriptional antiterminator; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA-binding protein YhbY; RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.543 |