STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKL34294.1Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (167 aa)    
Predicted Functional Partners:
AKL34293.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.675
AKL35385.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.658
ppnP
Hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
  
     0.624
rlmF
23S rRNA methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA.
 
     0.567
AKL34295.1
Xylan 1,4-beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
       0.559
yaeQ
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.556
eptA
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.482
AKL36179.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.474
rlmG
23S rRNA methyltransferase; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA.
 
     0.455
AKL34296.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.407
Your Current Organism:
Klebsiella oxytoca
NCBI taxonomy Id: 571
Other names: ATCC 13182, Bacillus oxytocus perniciosus, CCUG 15717, CIP 103434, DSM 5175, IAM 14201, K. oxytoca, Klebsiella sp. CECRI-24/07, Klebsiella sp. MN9SED2, LMG 3055, LMG:3055, NBRC 102593, NBRC 105695, NCTC 13727, strain 479-2
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