STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKL34402.1DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (68 aa)    
Predicted Functional Partners:
AKL34401.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.777
ydgH
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.674
hha_2
Gene expression modulator; With Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.545
AKL36276.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.538
AKL38604.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.523
AKL33999.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.468
AKL36223.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.463
cnu
oriC-binding nucleoid-associated protein; YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.454
AKL36277.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.440
yusO
DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.431
Your Current Organism:
Klebsiella oxytoca
NCBI taxonomy Id: 571
Other names: ATCC 13182, Bacillus oxytocus perniciosus, CCUG 15717, CIP 103434, DSM 5175, IAM 14201, K. oxytoca, Klebsiella sp. CECRI-24/07, Klebsiella sp. MN9SED2, LMG 3055, LMG:3055, NBRC 102593, NBRC 105695, NCTC 13727, strain 479-2
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