STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gudP_1Glucarate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)    
Predicted Functional Partners:
AKL34725.1
Glucarate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.878
gudD
Glucarate dehydratase; Catalyzes the formation of 5-keto-4-deoxy-D-glucarate from glucarate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.841
AKL34778.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.584
AKL35715.1
Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.584
glxK_2
Glycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycerate kinase type-1 family.
  
    0.536
garD
Galactarate dehydrogenase; Catalyzes the dehydration of galactarate to form 5-dehydro-4- deoxy-D-glucarate.
 
  
 0.439
AKL38949.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.432
AKL36561.1
Phosphoglycerate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.423
AKL36689.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.407
Your Current Organism:
Klebsiella oxytoca
NCBI taxonomy Id: 571
Other names: ATCC 13182, Bacillus oxytocus perniciosus, CCUG 15717, CIP 103434, DSM 5175, IAM 14201, K. oxytoca, Klebsiella sp. CECRI-24/07, Klebsiella sp. MN9SED2, LMG 3055, LMG:3055, NBRC 102593, NBRC 105695, NCTC 13727, strain 479-2
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