Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKL34930.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)    
Predicted Functional Partners:
AKL38364.1
Type I restriction endonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
  
 0.860
AKL34929.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.768
AKL36851.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.671
AKL38833.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.626
AKL38451.1
DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.565
AKL38454.1
ATP-dependent Lon protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.555
AKL38452.1
Type II restriction enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.550
AKL34396.1
Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.507
AKL38453.1
Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.503
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.489
Your Current Organism:
Klebsiella oxytoca
NCBI taxonomy Id: 571
Other names: ATCC 13182, Bacillus oxytocus perniciosus, CCUG 15717, CIP 103434, DSM 5175, IAM 14201, K. oxytoca, Klebsiella sp. CECRI-24/07, Klebsiella sp. MN9SED2, LMG 3055, LMG:3055, NBRC 102593, NBRC 105695, NCTC 13727, strain 479-2
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