STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKL34956.1DNA packaging protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (700 aa)    
Predicted Functional Partners:
AKL34958.1
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.963
AKL34959.1
Peptidase S14; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S14 family.
 
  
 0.956
AKL34960.1
Recombinase RecA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.937
AKL38800.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.825
AKL34957.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.790
AKL36831.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.789
AKL36836.1
Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.778
AKL36830.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.773
AKL34963.1
Tail fiber protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.772
AKL36829.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.770
Your Current Organism:
Klebsiella oxytoca
NCBI taxonomy Id: 571
Other names: ATCC 13182, Bacillus oxytocus perniciosus, CCUG 15717, CIP 103434, DSM 5175, IAM 14201, K. oxytoca, Klebsiella sp. CECRI-24/07, Klebsiella sp. MN9SED2, LMG 3055, LMG:3055, NBRC 102593, NBRC 105695, NCTC 13727, strain 479-2
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