Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fim_1Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)    
Predicted Functional Partners:
fimC_5
Long polar fimbrial chaperone LpfB; Binds with fimbrial subunit LpfA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.910
AKL35271.1
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.907
AKL35947.1
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.816
AKL33709.1
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.812
AKL38978.1
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.809
AKL34879.1
Export and assembly usher protein of type 1 fimbriae; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.808
AKL38684.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.807
AKL38720.1
Long polar fimbrial chaperone LpfB; Binds with fimbrial subunit LpfA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.804
AKL38729.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.803
fimC_7
Long polar fimbrial chaperone LpfB; Binds with fimbrial subunit LpfA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.799
Your Current Organism:
Klebsiella oxytoca
NCBI taxonomy Id: 571
Other names: ATCC 13182, Bacillus oxytocus perniciosus, CCUG 15717, CIP 103434, DSM 5175, IAM 14201, K. oxytoca, Klebsiella sp. CECRI-24/07, Klebsiella sp. MN9SED2, LMG 3055, LMG:3055, NBRC 102593, NBRC 105695, NCTC 13727, strain 479-2
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