STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gsiA_11Microcin ABC transporter ATP-binding protein; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (529 aa)    
Predicted Functional Partners:
yejB
Microcin ABC transporter permease; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
yejE
Microcin ABC transporter permease; Part of the microcin C transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.963
AKL38818.1
Antibiotic ABC transporter substrate-binding protein; With YejBEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.958
ddpC_1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.751
AKL35954.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.742
AKL35410.1
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.737
AKL35431.1
Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.735
AKL35955.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.724
AKL36458.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.710
AKL37295.1
Glutathione ABC transporter permease; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.706
Your Current Organism:
Klebsiella oxytoca
NCBI taxonomy Id: 571
Other names: ATCC 13182, Bacillus oxytocus perniciosus, CCUG 15717, CIP 103434, DSM 5175, IAM 14201, K. oxytoca, Klebsiella sp. CECRI-24/07, Klebsiella sp. MN9SED2, LMG 3055, LMG:3055, NBRC 102593, NBRC 105695, NCTC 13727, strain 479-2
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