Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKL35569.1Cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (71 aa)    
Predicted Functional Partners:
dsrB
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DsrB family.
     
 0.713
AKL35687.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.617
ycgB
SpoVR family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.597
AKL33896.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.574
uspB
ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.564
AKL36562.1
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.561
AKL38985.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.556
fic
Cell filamentation protein Fic; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.552
AKL36423.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.504
AKL35783.1
Cell division protein Fic; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.498
Your Current Organism:
Klebsiella oxytoca
NCBI taxonomy Id: 571
Other names: ATCC 13182, Bacillus oxytocus perniciosus, CCUG 15717, CIP 103434, DSM 5175, IAM 14201, K. oxytoca, Klebsiella sp. CECRI-24/07, Klebsiella sp. MN9SED2, LMG 3055, LMG:3055, NBRC 102593, NBRC 105695, NCTC 13727, strain 479-2
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