Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKL35715.1Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (670 aa)    
Predicted Functional Partners:
AKL35716.1
Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.885
AKL34962.1
Minor tail protein U; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.737
AKL34619.1
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.715
dgoT_2
D-galactonate transporter DgoT; Involved in the transport of galactonate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.629
AKL38316.1
L-galactonate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.618
exuT_4
Involved in the transport of aldohexuronates; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.616
exuT_1
Involved in the transport of aldohexuronates; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.615
dgoT_1
Glucarate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.611
AKL34268.1
Galactonate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.597
gudP_2
DgoT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.594
Your Current Organism:
Klebsiella oxytoca
NCBI taxonomy Id: 571
Other names: ATCC 13182, Bacillus oxytocus perniciosus, CCUG 15717, CIP 103434, DSM 5175, IAM 14201, K. oxytoca, Klebsiella sp. CECRI-24/07, Klebsiella sp. MN9SED2, LMG 3055, LMG:3055, NBRC 102593, NBRC 105695, NCTC 13727, strain 479-2
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