STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycaD_1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)    
Predicted Functional Partners:
AKL35619.1
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.676
AKL35617.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.639
yaaA
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0246 family.
  
    0.638
AKL38003.1
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.614
AKL35587.1
Siphovirus Gp157 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.597
AKL34973.1
Tail fiber; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.562
AKL35512.1
Lipoate-protein ligase A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.558
AKL34257.1
Enterotoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.548
AKL35233.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.539
AKL35623.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.489
Your Current Organism:
Klebsiella oxytoca
NCBI taxonomy Id: 571
Other names: ATCC 13182, Bacillus oxytocus perniciosus, CCUG 15717, CIP 103434, DSM 5175, IAM 14201, K. oxytoca, Klebsiella sp. CECRI-24/07, Klebsiella sp. MN9SED2, LMG 3055, LMG:3055, NBRC 102593, NBRC 105695, NCTC 13727, strain 479-2
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.