STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKL36250.1Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (335 aa)    
Predicted Functional Partners:
AKL35950.1
DNA recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
xerD_5
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.768
AKL34583.1
Tyrosine recombinase; Inversion of on/off regulator of fimA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.766
xerC_2
Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.766
AKL34584.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.765
AKL36867.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.733
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
   
 0.485
xerC
Site-specific tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerD binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerC specifical [...]
 
 
 
0.482
tagH
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.431
AKL37242.1
Cell division protein FtsK; DNA-binding membrane protein required for chromosome resolution and partitioning; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.422
Your Current Organism:
Klebsiella oxytoca
NCBI taxonomy Id: 571
Other names: ATCC 13182, Bacillus oxytocus perniciosus, CCUG 15717, CIP 103434, DSM 5175, IAM 14201, K. oxytoca, Klebsiella sp. CECRI-24/07, Klebsiella sp. MN9SED2, LMG 3055, LMG:3055, NBRC 102593, NBRC 105695, NCTC 13727, strain 479-2
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