STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKL36423.1XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (98 aa)    
Predicted Functional Partners:
AKL36422.1
Toxin HigB-2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.953
AKL34283.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.524
AKL36960.1
secY/secA suppressor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.491
AKL35838.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.488
AKL36562.1
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.465
elaB_2
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.463
AKL33747.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.450
elaB
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.437
dps
DNA starvation/stationary phase protection protein Dps; During stationary phase, binds the chromosome non- specifically, forming a highly ordered and stable dps-DNA co-crystal within which chromosomal DNA is condensed and protected from diverse damages. It protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction; Belongs to the Dps family.
   
    0.426
AKL35569.1
Cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.422
Your Current Organism:
Klebsiella oxytoca
NCBI taxonomy Id: 571
Other names: ATCC 13182, Bacillus oxytocus perniciosus, CCUG 15717, CIP 103434, DSM 5175, IAM 14201, K. oxytoca, Klebsiella sp. CECRI-24/07, Klebsiella sp. MN9SED2, LMG 3055, LMG:3055, NBRC 102593, NBRC 105695, NCTC 13727, strain 479-2
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