Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKL36657.1Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (545 aa)    
Predicted Functional Partners:
AKL38886.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.973
AKL36656.1
Serine peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.966
AKL36653.1
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.957
AKL36654.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.953
AKL36642.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.802
AKL36648.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.802
AKL36639.1
Phage baseplate J-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.794
AKL36643.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.791
AKL36655.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.790
AKL36658.1
Phage head-tail adapter protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.790
Your Current Organism:
Klebsiella oxytoca
NCBI taxonomy Id: 571
Other names: ATCC 13182, Bacillus oxytocus perniciosus, CCUG 15717, CIP 103434, DSM 5175, IAM 14201, K. oxytoca, Klebsiella sp. CECRI-24/07, Klebsiella sp. MN9SED2, LMG 3055, LMG:3055, NBRC 102593, NBRC 105695, NCTC 13727, strain 479-2
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