Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKL38887.1Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)    
Predicted Functional Partners:
AKL36665.1
Holin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.786
AKL33942.1
Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.745
AKL36837.1
Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.522
AKL36844.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.517
AKL36834.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.488
AKL36847.1
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.484
AKL36836.1
Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.451
AKL36845.1
Capsid assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.419
AKL36848.1
Phage capsid scaffolding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.417
AKL36668.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.416
Your Current Organism:
Klebsiella oxytoca
NCBI taxonomy Id: 571
Other names: ATCC 13182, Bacillus oxytocus perniciosus, CCUG 15717, CIP 103434, DSM 5175, IAM 14201, K. oxytoca, Klebsiella sp. CECRI-24/07, Klebsiella sp. MN9SED2, LMG 3055, LMG:3055, NBRC 102593, NBRC 105695, NCTC 13727, strain 479-2
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