Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AKL35902.1 | AKL36875.1 | AB185_19265 | AB185_24535 | TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. | Iron dicitrate transport regulator FecR; With FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.704 |
| AKL36404.1 | AKL36875.1 | AB185_22015 | AB185_24535 | TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. | Iron dicitrate transport regulator FecR; With FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.636 |
| AKL36404.1 | AKL36925.1 | AB185_22015 | AB185_24790 | TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ferric-rhodotorulic acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.617 |
| AKL36404.1 | fecB | AB185_22015 | AB185_24545 | TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. | Iron-dicitrate transporter substrate-binding subunit; Part of the ABC transporter involved in the uptake of citrate-dependent Fe(3+); Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.685 |
| AKL36875.1 | AKL35902.1 | AB185_24535 | AB185_19265 | Iron dicitrate transport regulator FecR; With FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology. | TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.704 |
| AKL36875.1 | AKL36404.1 | AB185_24535 | AB185_22015 | Iron dicitrate transport regulator FecR; With FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology. | TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.636 |
| AKL36875.1 | AKL36876.1 | AB185_24535 | AB185_24540 | Iron dicitrate transport regulator FecR; With FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.935 |
| AKL36875.1 | AKL36925.1 | AB185_24535 | AB185_24790 | Iron dicitrate transport regulator FecR; With FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ferric-rhodotorulic acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.765 |
| AKL36875.1 | AKL37936.1 | AB185_24535 | AB185_30260 | Iron dicitrate transport regulator FecR; With FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.720 |
| AKL36875.1 | AKL37961.1 | AB185_24535 | AB185_30390 | Iron dicitrate transport regulator FecR; With FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.628 |
| AKL36875.1 | AKL38083.1 | AB185_24535 | AB185_31100 | Iron dicitrate transport regulator FecR; With FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ferrichrome transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.729 |
| AKL36875.1 | AKL38950.1 | AB185_24535 | AB185_30565 | Iron dicitrate transport regulator FecR; With FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ferrioxamine B receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.704 |
| AKL36875.1 | fecB | AB185_24535 | AB185_24545 | Iron dicitrate transport regulator FecR; With FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology. | Iron-dicitrate transporter substrate-binding subunit; Part of the ABC transporter involved in the uptake of citrate-dependent Fe(3+); Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.700 |
| AKL36875.1 | fecI_2 | AB185_24535 | AB185_24530 | Iron dicitrate transport regulator FecR; With FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase sigma factor FecI; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates the genes for iron dicitrate transport; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.972 |
| AKL36876.1 | AKL36875.1 | AB185_24540 | AB185_24535 | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Iron dicitrate transport regulator FecR; With FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.935 |
| AKL36876.1 | AKL37936.1 | AB185_24540 | AB185_30260 | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.678 |
| AKL36876.1 | AKL37961.1 | AB185_24540 | AB185_30390 | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.648 |
| AKL36876.1 | AKL38083.1 | AB185_24540 | AB185_31100 | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ferrichrome transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.473 |
| AKL36876.1 | fecB | AB185_24540 | AB185_24545 | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Iron-dicitrate transporter substrate-binding subunit; Part of the ABC transporter involved in the uptake of citrate-dependent Fe(3+); Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.928 |
| AKL36876.1 | fecI_2 | AB185_24540 | AB185_24530 | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase sigma factor FecI; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates the genes for iron dicitrate transport; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.895 |
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