STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI23868.1Unsaturated rhamnogalacturonyl hydrolase. (365 aa)    
Predicted Functional Partners:
SDI23820.1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
     0.993
SDI23911.1
Pectin methylesterase.
 
     0.943
SDI23776.1
Oligogalacturonide transport system substrate-binding protein.
 
    0.899
SDI23591.1
Alpha-galactosidase.
 
  
  0.875
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.836
SDI23679.1
Oligogalacturonide transport system permease protein.
 
    0.806
SDI23545.1
Transcriptional regulator, AraC family.
 
     0.805
SDI23632.1
Oligogalacturonide transport system permease protein.
 
     0.767
SDJ55177.1
Unsaturated chondroitin disaccharide hydrolase.
  
     0.716
SDI23727.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
 
     0.612
Your Current Organism:
Pseudoruegeria lutimaris
NCBI taxonomy Id: 571298
Other names: CCUG 57754, DSM 25294, KCTC 22690, P. lutimaris, Pseudoruegeria lutimaris Jung et al. 2010, Pseudoruegeria sp. HD-43, strain HD-43
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