STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI58679.1Hypothetical protein. (116 aa)    
Predicted Functional Partners:
SDK65572.1
Hypothetical protein.
  
     0.586
SDI58720.1
[LSU ribosomal protein L11P]-lysine N-methyltransferase.
       0.563
SDK40570.1
Hypothetical protein.
  
     0.492
SDI58763.1
AAA domain-containing protein.
 
     0.485
SDI46632.1
Hypothetical protein.
  
     0.477
SDK40613.1
4 TMS phage holin, superfamily IV.
  
     0.450
SDL63953.1
Porin.
  
     0.450
SDJ01666.1
DNA-binding transcriptional regulator, MarR family.
  
     0.428
SDI92066.1
Hint domain-containing protein.
  
     0.427
SDI48075.1
Hint domain-containing protein.
  
     0.421
Your Current Organism:
Pseudoruegeria lutimaris
NCBI taxonomy Id: 571298
Other names: CCUG 57754, DSM 25294, KCTC 22690, P. lutimaris, Pseudoruegeria lutimaris Jung et al. 2010, Pseudoruegeria sp. HD-43, strain HD-43
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.