STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI53672.1NADP-dependent 3-hydroxy acid dehydrogenase YdfG. (217 aa)    
Predicted Functional Partners:
SDK73158.1
4Fe-4S single cluster domain of Ferredoxin I.
  
 
  0.777
surE
5'-nucleotidase /3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
       0.663
pcm
protein-L-isoaspartate(D-aspartate) O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
       0.661
SDJ80656.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
  0.626
SDI53719.1
Hypothetical protein.
       0.617
SDM03956.1
7-alpha-hydroxysteroid dehydrogenase.
  
 
  0.526
SDI53523.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
  
    0.507
SDL58135.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
  0.473
SDJ22450.1
FGGY family of carbohydrate kinases, N-terminal domain.
 
  
  0.457
SDL12162.1
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
  0.450
Your Current Organism:
Pseudoruegeria lutimaris
NCBI taxonomy Id: 571298
Other names: CCUG 57754, DSM 25294, KCTC 22690, P. lutimaris, Pseudoruegeria lutimaris Jung et al. 2010, Pseudoruegeria sp. HD-43, strain HD-43
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.