STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK03935.1RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (147 aa)    
Predicted Functional Partners:
SDK03978.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     0.991
SDK03848.1
Hydrophobe/amphiphile efflux-1 (HAE1) family protein.
 
 0.966
SDK03893.1
AcrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.966
SDJ43318.1
Hydrophobic/amphiphilic exporter-1, HAE1 family.
  
 0.881
SDK84627.1
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.773
SDK03810.1
Peptidase propeptide and YPEB domain-containing protein.
 
     0.747
SDI34455.1
Outer membrane protein.
  
 0.740
SDK03735.1
Signal transduction histidine kinase.
       0.714
SDK03774.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
       0.714
SDK04019.1
Transcriptional regulator, TetR family.
 
     0.705
Your Current Organism:
Pseudoruegeria lutimaris
NCBI taxonomy Id: 571298
Other names: CCUG 57754, DSM 25294, KCTC 22690, P. lutimaris, Pseudoruegeria lutimaris Jung et al. 2010, Pseudoruegeria sp. HD-43, strain HD-43
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