STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK06946.1Predicted dehydrogenase. (339 aa)    
Predicted Functional Partners:
SDK07038.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
     0.938
SDK06990.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
     0.932
SDK07140.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.854
SDK06883.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
 
     0.807
SDK07089.1
Hypothetical protein.
       0.768
SDJ75004.1
2-keto-myo-inositol dehydratase.
 
 
  0.731
SDK07318.1
Glutamine--fructose-6-phosphate transaminase.
 
     0.704
SDK07178.1
N-acetylmuramic acid 6-phosphate etherase.
 
     0.696
SDK07228.1
Glucosamine kinase.
 
    0.648
SDK07267.1
Transcriptional regulator, GntR family.
 
    0.633
Your Current Organism:
Pseudoruegeria lutimaris
NCBI taxonomy Id: 571298
Other names: CCUG 57754, DSM 25294, KCTC 22690, P. lutimaris, Pseudoruegeria lutimaris Jung et al. 2010, Pseudoruegeria sp. HD-43, strain HD-43
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.