STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK13639.1Predicted PurR-regulated permease PerM. (372 aa)    
Predicted Functional Partners:
SDI24567.1
Protein of unknown function.
  
 
   0.669
SDI56337.1
Ion channel.
 
     0.539
SDL63987.1
Hypothetical protein.
  
     0.518
SDL33629.1
Hypothetical protein.
  
     0.485
SDI45080.1
Tetratricopeptide repeat-containing protein.
  
     0.468
SDL32415.1
Multidrug resistance efflux pump.
 
     0.458
SDI45394.1
Protein of unknown function.
  
     0.453
SDI45253.1
Haloacid dehalogenase-like hydrolase.
 
     0.443
SDJ54010.1
Hypothetical protein.
  
     0.438
SDI20119.1
Multidrug resistance efflux pump.
 
     0.435
Your Current Organism:
Pseudoruegeria lutimaris
NCBI taxonomy Id: 571298
Other names: CCUG 57754, DSM 25294, KCTC 22690, P. lutimaris, Pseudoruegeria lutimaris Jung et al. 2010, Pseudoruegeria sp. HD-43, strain HD-43
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.