STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK54073.1Uncharacterized conserved protein, heparinase superfamily. (606 aa)    
Predicted Functional Partners:
lspA
Signal peptidase II Aspartic peptidase. MEROPS family A08; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
       0.851
purH
IMP cyclohydrolase.
       0.851
SDK54139.1
16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
    0.827
SDK53898.1
Beta-barrel assembly machine subunit BamF.
 
     0.790
SDK54203.1
Hypothetical protein.
       0.698
SDI94074.1
Protein of unknown function.
  
     0.682
SDK31387.1
Flp pilus assembly protein TadG.
  
    0.621
SDK31443.1
Von Willebrand factor type A domain-containing protein.
  
    0.619
SDK53764.1
Zinc protease.
       0.618
SDJ12021.1
Hypothetical protein.
  
     0.617
Your Current Organism:
Pseudoruegeria lutimaris
NCBI taxonomy Id: 571298
Other names: CCUG 57754, DSM 25294, KCTC 22690, P. lutimaris, Pseudoruegeria lutimaris Jung et al. 2010, Pseudoruegeria sp. HD-43, strain HD-43
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.