STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL46812.13',5'-cyclic AMP phosphodiesterase CpdA. (310 aa)    
Predicted Functional Partners:
SDJ78858.1
Signal transduction histidine kinase.
  
 
 0.894
SDK44244.1
GAF domain-containing protein.
    
 0.860
SDJ00508.1
His Kinase A (phospho-acceptor) domain-containing protein.
   
 
 0.851
SDL88888.1
Adenylate cyclase.
 
 
 0.829
SDL01199.1
PAS/PAC sensor hybrid histidine kinase.
  
 
 0.827
SDK99340.1
PAS domain S-box-containing protein.
  
  
 0.810
SDL77023.1
Hypothetical protein.
    
 0.809
SDJ01625.1
Histidine kinase.
  
 
 0.805
SDK06064.1
HAMP domain-containing protein.
   
 
 0.804
SDL79753.1
PAS/PAC sensor hybrid histidine kinase.
   
 
 0.804
Your Current Organism:
Pseudoruegeria lutimaris
NCBI taxonomy Id: 571298
Other names: CCUG 57754, DSM 25294, KCTC 22690, P. lutimaris, Pseudoruegeria lutimaris Jung et al. 2010, Pseudoruegeria sp. HD-43, strain HD-43
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.