STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF14152.1EF hand. (137 aa)    
Predicted Functional Partners:
SDF14182.1
SlyX protein.
       0.773
SDF66481.1
Methionine synthase (B12-dependent).
   
 
  0.720
SDF14120.1
Hypothetical protein.
       0.563
SDG04360.1
Hypothetical protein.
    
  0.477
SDG04958.1
Hypothetical protein.
    
  0.477
SDG04077.1
VCBS repeat-containing protein.
    
  0.451
SDG04561.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
   
 
  0.432
Your Current Organism:
Desulfovibrio legallii
NCBI taxonomy Id: 571438
Other names: CCUG 54389, D. legallii, DSM 19129, Desulfovibrio legallii corrig. Thabet et al. 2013, Desulfovibrio legallis, Desulfovibrio sp. H1, strain H1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.