STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF72962.1Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. (296 aa)    
Predicted Functional Partners:
SDF72994.1
Rod shape-determining protein MreB.
 
 
 0.991
SDF72907.1
Peptidoglycan glycosyltransferase.
 
 
 0.987
SDF37638.1
Rod shape-determining protein MreB.
 
 
 0.977
mrdB
Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
  
 0.936
SDF49859.1
Cell division protein FtsI (penicillin-binding protein 3).
 
 
 0.853
SDF09845.1
DNA repair protein RadC; Belongs to the UPF0758 family.
  
  
 0.826
SDF72936.1
Hypothetical protein.
 
     0.826
SDF72849.1
Protein CcmA, bactofilin family.
 
     0.752
SDF53162.1
Septum formation protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
  
 0.676
SDF69033.1
Cytoskeleton protein RodZ.
 
 
 
 0.604
Your Current Organism:
Desulfovibrio legallii
NCBI taxonomy Id: 571438
Other names: CCUG 54389, D. legallii, DSM 19129, Desulfovibrio legallii corrig. Thabet et al. 2013, Desulfovibrio legallis, Desulfovibrio sp. H1, strain H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.