STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF75661.1uroporphyrinogen-III synthase. (509 aa)    
Predicted Functional Partners:
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
 0.999
SDF54382.1
Porphobilinogen synthase; Belongs to the ALAD family.
 
 0.999
SDF28578.1
Precorrin-2 dehydrogenase.
 
 
 0.995
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
 
 
 0.971
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
  
 0.962
SDF89199.1
Precorrin-2 C20-methyltransferase /cobalt-factor II C20-methyltransferase.
 
 
 0.953
SDF18541.1
precorrin-3B C17-methyltransferase.
 
 0.944
SDF37046.1
NifU-like protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.919
SDF67850.1
Adenylylsulfate kinase.
 
  
 0.910
SDF18511.1
Cobalt-precorrin 5A acetaldehyde-lyase.
  
 0.909
Your Current Organism:
Desulfovibrio legallii
NCBI taxonomy Id: 571438
Other names: CCUG 54389, D. legallii, DSM 19129, Desulfovibrio legallii corrig. Thabet et al. 2013, Desulfovibrio legallis, Desulfovibrio sp. H1, strain H1
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