Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
argS | carB | SAMN05192586_1295 | SAMN05192586_11648 | arginyl-tRNA synthetase. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.526 |
argS | guaA | SAMN05192586_1295 | SAMN05192586_11818 | arginyl-tRNA synthetase. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.993 |
argS | lysS | SAMN05192586_1295 | SAMN05192586_11634 | arginyl-tRNA synthetase. | lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.946 |
argS | map | SAMN05192586_1295 | SAMN05192586_11137 | arginyl-tRNA synthetase. | Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.434 |
argS | pyrG | SAMN05192586_1295 | SAMN05192586_10631 | arginyl-tRNA synthetase. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.839 |
argS | rplA | SAMN05192586_1295 | SAMN05192586_101208 | arginyl-tRNA synthetase. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.497 |
argS | rplK | SAMN05192586_1295 | SAMN05192586_101209 | arginyl-tRNA synthetase. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.650 |
argS | tuf | SAMN05192586_1295 | SAMN05192586_101214 | arginyl-tRNA synthetase. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.416 |
carB | argS | SAMN05192586_11648 | SAMN05192586_1295 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | arginyl-tRNA synthetase. | 0.526 |
carB | guaA | SAMN05192586_11648 | SAMN05192586_11818 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.995 |
carB | guaB | SAMN05192586_11648 | SAMN05192586_11817 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.982 |
carB | hisA | SAMN05192586_11648 | SAMN05192586_11823 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase. | 0.811 |
carB | lysS | SAMN05192586_11648 | SAMN05192586_11634 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.622 |
carB | pyrG | SAMN05192586_11648 | SAMN05192586_10631 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.910 |
carB | tuf | SAMN05192586_11648 | SAMN05192586_101214 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.636 |
guaA | argS | SAMN05192586_11818 | SAMN05192586_1295 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | arginyl-tRNA synthetase. | 0.993 |
guaA | carB | SAMN05192586_11818 | SAMN05192586_11648 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.995 |
guaA | guaB | SAMN05192586_11818 | SAMN05192586_11817 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.999 |
guaA | hisA | SAMN05192586_11818 | SAMN05192586_11823 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase. | 0.988 |
guaA | lysS | SAMN05192586_11818 | SAMN05192586_11634 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.987 |
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