Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEA71330.1 | SEA95453.1 | SAMN05421743_107107 | SAMN05421743_11158 | Protein of unknown function; Belongs to the UPF0741 family. | Putative protease. | 0.732 |
SEA71330.1 | SEA95473.1 | SAMN05421743_107107 | SAMN05421743_11159 | Protein of unknown function; Belongs to the UPF0741 family. | Putative protease. | 0.654 |
SEA72508.1 | SEA95453.1 | SAMN05421743_107147 | SAMN05421743_11158 | Cytochrome d ubiquinol oxidase subunit I. | Putative protease. | 0.541 |
SEA72508.1 | SEA95473.1 | SAMN05421743_107147 | SAMN05421743_11159 | Cytochrome d ubiquinol oxidase subunit I. | Putative protease. | 0.541 |
SEA72508.1 | SEB11193.1 | SAMN05421743_107147 | SAMN05421743_11749 | Cytochrome d ubiquinol oxidase subunit I. | Cytochrome d ubiquinol oxidase subunit I. | 0.422 |
SEA95431.1 | SEA95453.1 | SAMN05421743_11157 | SAMN05421743_11158 | Predicted O-methyltransferase YrrM. | Putative protease. | 0.960 |
SEA95431.1 | SEA95473.1 | SAMN05421743_11157 | SAMN05421743_11159 | Predicted O-methyltransferase YrrM. | Putative protease. | 0.913 |
SEA95431.1 | SEA96403.1 | SAMN05421743_11157 | SAMN05421743_111100 | Predicted O-methyltransferase YrrM. | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.512 |
SEA95431.1 | mltG | SAMN05421743_11157 | SAMN05421743_11156 | Predicted O-methyltransferase YrrM. | UPF0755 protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.562 |
SEA95431.1 | udk | SAMN05421743_11157 | SAMN05421743_11160 | Predicted O-methyltransferase YrrM. | Uridine kinase. | 0.867 |
SEA95453.1 | SEA71330.1 | SAMN05421743_11158 | SAMN05421743_107107 | Putative protease. | Protein of unknown function; Belongs to the UPF0741 family. | 0.732 |
SEA95453.1 | SEA72508.1 | SAMN05421743_11158 | SAMN05421743_107147 | Putative protease. | Cytochrome d ubiquinol oxidase subunit I. | 0.541 |
SEA95453.1 | SEA95431.1 | SAMN05421743_11158 | SAMN05421743_11157 | Putative protease. | Predicted O-methyltransferase YrrM. | 0.960 |
SEA95453.1 | SEA95473.1 | SAMN05421743_11158 | SAMN05421743_11159 | Putative protease. | Putative protease. | 0.920 |
SEA95453.1 | SEA96403.1 | SAMN05421743_11158 | SAMN05421743_111100 | Putative protease. | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.707 |
SEA95453.1 | SEB11193.1 | SAMN05421743_11158 | SAMN05421743_11749 | Putative protease. | Cytochrome d ubiquinol oxidase subunit I. | 0.541 |
SEA95453.1 | asd | SAMN05421743_11158 | SAMN05421743_11333 | Putative protease. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.603 |
SEA95453.1 | dapB | SAMN05421743_11158 | SAMN05421743_106133 | Putative protease. | 4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.615 |
SEA95453.1 | mltG | SAMN05421743_11158 | SAMN05421743_11156 | Putative protease. | UPF0755 protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.562 |
SEA95453.1 | udk | SAMN05421743_11158 | SAMN05421743_11160 | Putative protease. | Uridine kinase. | 0.806 |
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