STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP85994.1N-acetylmuramoyl-L-alanine amidase. (228 aa)    
Predicted Functional Partners:
SER29078.1
N-acetylmuramoyl-L-alanine amidase.
  
0.794
SEQ89982.1
Rhomboid protease GluP.
  
   0.740
SER13385.1
Membrane associated serine protease, rhomboid family.
  
   0.740
SER21212.1
Rhomboid family peptidase. Serine peptidase. MEROPS family S54.
  
   0.740
SEP86044.1
Phage holin family Hol44, holin superfamily V.
       0.739
SER13309.1
Outer membrane lipoprotein-sorting protein.
  
 
   0.735
SEQ37387.1
3',5'-cyclic AMP phosphodiesterase CpdA.
    
  0.680
SER12330.1
N-acetylmuramoyl-L-alanine amidase.
  
  
  0.670
SEQ77572.1
Beta-N-acetylglucosaminidase.
  
 
 0.456
SEP85923.1
Arsenite efflux ATP-binding protein ArsA.
       0.450
Your Current Organism:
Piscibacillus halophilus
NCBI taxonomy Id: 571933
Other names: CCM 7596, DSM 21633, JCM 15721, LMG 24786, LMG:24786, P. halophilus, Piscibacillus halophilus Amoozegar et al. 2009, Piscibacillus sp. HS224, strain HS224
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