STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP78358.1TIGR00341 family protein. (340 aa)    
Predicted Functional Partners:
SEP78242.1
Spore germination protein.
       0.544
SEP78283.1
Spore germination protein (amino acid permease).
       0.544
SEP78322.1
GerA spore germination protein.
       0.544
SEP78393.1
Hypothetical protein.
       0.524
SEP78507.1
Trypsin-like peptidase domain-containing protein.
 
     0.504
SEQ80529.1
Transporter, NhaC family.
  
     0.418
Your Current Organism:
Piscibacillus halophilus
NCBI taxonomy Id: 571933
Other names: CCM 7596, DSM 21633, JCM 15721, LMG 24786, LMG:24786, P. halophilus, Piscibacillus halophilus Amoozegar et al. 2009, Piscibacillus sp. HS224, strain HS224
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.