STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ07976.1Peptidase family M23. (244 aa)    
Predicted Functional Partners:
SEP57353.1
Flagellar motor switch protein FliN/FliY.
   
   0.751
SEQ20406.1
Penicillin-binding protein, 1A family.
  
     0.690
SER12711.1
Transglycosylase SLT domain-containing protein.
   
 0.620
SEP81457.1
Penicillin-binding protein 2A.
  
     0.602
SEP66527.1
Penicillin-binding protein 1A.
  
     0.601
SEQ77389.1
D-alanine-D-alanine ligase.
    
 0.555
SEQ77438.1
D-alanine-D-alanine ligase.
    
 0.555
SEQ77475.1
D-alanine-D-alanine ligase.
    
 0.555
SEQ77513.1
D-alanine-D-alanine ligase.
    
 0.555
SEQ28146.1
Cell division protein FtsW; Belongs to the SEDS family.
 
   
 0.511
Your Current Organism:
Piscibacillus halophilus
NCBI taxonomy Id: 571933
Other names: CCM 7596, DSM 21633, JCM 15721, LMG 24786, LMG:24786, P. halophilus, Piscibacillus halophilus Amoozegar et al. 2009, Piscibacillus sp. HS224, strain HS224
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