STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ12139.1Transposase DDE domain-containing protein. (80 aa)    
Predicted Functional Partners:
SEQ18159.1
Hypothetical protein.
 
     0.823
SER16741.1
Hypothetical protein.
 
     0.804
SEQ71139.1
Hypothetical protein.
 
     0.798
SER22158.1
Hypothetical protein.
 
     0.797
SEQ60857.1
Transposase domain.
 
     0.785
SEQ93020.1
Transposase domain.
 
     0.771
SER21386.1
Transposase domain.
 
     0.771
SEQ88093.1
Transposase domain.
 
     0.722
Your Current Organism:
Piscibacillus halophilus
NCBI taxonomy Id: 571933
Other names: CCM 7596, DSM 21633, JCM 15721, LMG 24786, LMG:24786, P. halophilus, Piscibacillus halophilus Amoozegar et al. 2009, Piscibacillus sp. HS224, strain HS224
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.