STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ42934.1Cupin domain-containing protein. (121 aa)    
Predicted Functional Partners:
SEQ42976.1
ADP-ribose pyrophosphatase YjhB, NUDIX family.
       0.741
SEQ43012.1
Hypothetical protein.
       0.736
SEP61067.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
    
  0.654
SEQ20644.1
Catalase.
    
  0.654
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.622
SEQ42892.1
Hypothetical protein.
       0.610
SER02710.1
Mannose-6-phosphate isomerase, cupin superfamily.
  
  0.572
SEQ42849.1
Hypothetical protein.
       0.537
SEQ58922.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
    
 0.472
SER21794.1
Ectoine hydroxylase.
    
 0.435
Your Current Organism:
Piscibacillus halophilus
NCBI taxonomy Id: 571933
Other names: CCM 7596, DSM 21633, JCM 15721, LMG 24786, LMG:24786, P. halophilus, Piscibacillus halophilus Amoozegar et al. 2009, Piscibacillus sp. HS224, strain HS224
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