STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ50055.1Putative zinc-or iron-chelating domain-containing protein. (241 aa)    
Predicted Functional Partners:
SEP94450.1
Hypothetical protein.
  
     0.754
SEP57183.1
Flagellar basal-body rod modification protein FlgD.
   
   0.704
SEP74336.1
Competence protein ComGD.
  
     0.680
SEP92713.1
Post-transcriptional regulator.
  
     0.670
SEQ14060.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.607
SEP80843.1
Gas vesicle protein.
  
     0.579
SEQ95455.1
Tetratricopeptide repeat-containing protein.
  
     0.554
SEP57150.1
Hook-length control protein FliK.
  
    0.552
SEQ20063.1
Tetratricopeptide repeat-containing protein.
  
     0.541
SEQ23902.1
Tetratricopeptide repeat-containing protein.
 
     0.537
Your Current Organism:
Piscibacillus halophilus
NCBI taxonomy Id: 571933
Other names: CCM 7596, DSM 21633, JCM 15721, LMG 24786, LMG:24786, P. halophilus, Piscibacillus halophilus Amoozegar et al. 2009, Piscibacillus sp. HS224, strain HS224
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