STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ52041.1Nuclease-related domain-containing protein. (339 aa)    
Predicted Functional Partners:
SEP69353.1
Hypothetical protein.
  
     0.730
SEQ24996.1
Flagellar protein FliT.
  
     0.530
SEQ97138.1
Hypothetical protein.
  
     0.526
SEQ41814.1
Hypothetical protein.
  
     0.518
SEQ52005.1
acetyl-CoA synthetase.
       0.512
SEP80381.1
Protein of unknown function DUF58.
  
     0.508
SER18407.1
Glutamate synthase (NADPH) small subunit.
  
  
 0.499
SEQ81498.1
YndJ-like protein.
  
     0.490
SEQ32483.1
O-acetylhomoserine sulfhydrylase.
   
    0.483
SEP80625.1
Transcriptional regulator.
  
     0.465
Your Current Organism:
Piscibacillus halophilus
NCBI taxonomy Id: 571933
Other names: CCM 7596, DSM 21633, JCM 15721, LMG 24786, LMG:24786, P. halophilus, Piscibacillus halophilus Amoozegar et al. 2009, Piscibacillus sp. HS224, strain HS224
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